Gene expression annotations

This data set contains annotations on the probes used for gene expression

GE_annot

Format

one instance, 1 row per probe

Source

IGR, Villejuif, France

Examples

#read data
data(GE_annot)
head(GE_annot)
#>                 ProbeName Strand ProbeChr ProbeStart
#> A_23_P413224 A_23_P413224      +     chr6   41304076
#> A_23_P76654   A_23_P76654      -    chr13   28539035
#> A_23_P210379 A_23_P210379      +    chr20   61920896
#> A_24_P244952 A_24_P244952      -    chr16   18816793
#> A_23_P86818   A_23_P86818      -    chr11   45937786
#> A_23_P259632 A_23_P259632      -     chr7   75616502
#>                                                                  ProbeSeq
#> A_23_P413224 AAGACTCAGGACATTACTGGTGTAGAATCTACCGCCCTTCTGACAACTCTGTCTCTAAGT
#> A_23_P76654  CTAGCTCGGCTTTCCTCCGGATGGTGATGTAGCGACTGTAGTGAAACTCCTTCTCCAGCT
#> A_23_P210379 CCACTCTGCCCCAGGGAGTCCCTTTTGATGGGAAGTGCAGTCAGCAGCGTGGAGGTGTCT
#> A_24_P244952 GCCCTTGAACTTATAAAGCTTTTCTCATTAAGAGTCAGTTTTACCCTTCTGTAAATAAGG
#> A_23_P86818  CTTTTTCCGAAGCTCCTTCCGTAGGATCCCGTCATTGAGCAGCACAAGCAGGTTAGAGGC
#> A_23_P259632 CTCCCGTGCCGCTGACTGTGAAACTTGTGGTGCACAACCCTCAGGGTGGTGAAGAAATTG
#>              OtherMatch Mismatch         ID   Symbol   Chr Strand.1    Start
#> A_23_P413224          0          uc003oqh.2     NCR2  chr6       NA 41303527
#> A_23_P76654           0          uc001urv.2     CDX2 chr13       NA 28536278
#> A_23_P210379          0          uc002yel.2  ARFGAP1 chr20       NA 61904164
#> A_24_P244952          0          uc002dfm.2     SMG1 chr16       NA 18816175
#> A_23_P86818           0          uc001nbu.2    PEX16 chr11       NA 45931220
#> A_23_P259632          0          uc003ued.2 TMEM120A  chr7       NA 75616155
#>                   End Transcript cytoBand1 cytoBand2     X.kgID    refseq
#> A_23_P413224 41318625 uc003oqh.2     p21.1      <NA> uc003oqh.2 NM_004828
#> A_23_P76654  28543317 uc001urv.2     q12.2      <NA> uc001urv.2 NM_001265
#> A_23_P210379 61921141 uc002yel.2    q13.33      <NA> uc002yel.2 NM_175609
#> A_24_P244952 18937726 uc002dfm.2     p12.3      <NA> uc002dfm.2 NM_015092
#> A_23_P86818  45939674 uc001nbu.2     p11.2      <NA> uc001nbu.2 NM_004813
#> A_23_P259632 75623992 uc003ued.2    q11.23      <NA> uc003ued.2 NM_031925
#>              geneSymbol                                description
#> A_23_P413224       NCR2 natural cytotoxicity triggering receptor 2
#> A_23_P76654        CDX2                     caudal type homeobox 2
#> A_23_P210379    ARFGAP1  ADP-ribosylation factor GTPase activating
#> A_24_P244952       SMG1           PI-3-kinase-related kinase SMG-1
#> A_23_P86818       PEX16 peroxisomal biogenesis factor 16 isoform 1
#> A_23_P259632   TMEM120A                 transmembrane protein 120A