Despite the description minimal requirements find which versions are required due to dependencies.
Arguments
- pkg
Path to a file with a DESCRIPTION file or a package's names.
- which
a character vector listing the types of dependencies, a subset of
c("Depends", "Imports", "LinkingTo", "Suggests", "Enhances"). Character string"all"is shorthand for that vector, character string"most"for the same vector without"Enhances", character string"strong"(default) for the first three elements of that vector.
Value
A data.frame with the name, version required, if only one package is provided it also show the version used.
Examples
pd <- package_dependencies("ggeasy")
#> Warning: Some dependencies are not on available repositories. Check for 'Additional_repositories' or other repositories (Bioconductor.org?):
#> aroma.light, DNAcopy, phyloseq, preprocessCore, pcaMethods, sparseMatrixStats, qvalue, Rgraphviz, edgeR, ALDEx2, EBImage, Biostrings, GenomicAlignments, IRanges, limma, org.Hs.eg.db, AnnotationDbi, DESeq2, Biobase, pwalign, maftools, ComplexHeatmap, GSVA, SummarizedExperiment, siggenes, annotate, fgsea, ConsensusClusterPlus, clusterProfiler, sva, affyPLM, affy, graph, fabia, RBGL, Rsamtools, impute, GO.db, biomaRt, rhdf5, mixOmics, survcomp, ggtree, treeio, GOSemSim, GENIE3, GenomicRanges, org.Dr.eg.db, org.Mm.eg.db, bluster, genefilter, BiocParallel, multtest, fmcsR, ChemmineR, ChIPseeker, TxDb.Hsapiens.UCSC.hg38.knownGene, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Mmusculus.UCSC.mm10.knownGene, SingleCellExperiment, TCseq, GSEABase, singscore, GenomicInteractions, rtracklayer, BiocFileCache, DECIPHER, tximport, BiocGenerics, GenomeInfoDb, S4Vectors, ensembldb, STRINGdb, GenomicFeatures, TCGAbiolinks, SNPRelate, snpStats, dada2, ShortRead, RedeR, Icens, RCy3, signatureSearch, signatureSearchData, MLInterfaces, ALL, TSCAN, MAST, DelayedArray, HDF5Array, minfi, IlluminaHumanMethylationEPICanno.ilm10b4.hg19, IlluminaHumanMethylation450kanno.ilmn12.hg19, AUCell, Rdisop, gdsfmt, BiocStyle, BSgenome, BSgenome.Hsapiens.UCSC.hg38, GEOquery, biocViews, reactome.db, ggmsa, VariantAnnotation, DOSE, Heatplus, fmrs, bamsignals, KEGGgraph, graphite, SparseArray, zlibbioc, Rhtslib, seqLogo, vsn, M3C, pathview, AnnotationFilter, QSutils, MassSpecWavelet, qusage, microbiome, InteractiveComplexHeatmap, globaltest, GlobalAncova, scran, scuttle, a4Core, ggkegg, ReactomePA, Mfuzz, BiocVersion, EmpiricalBrownsMethod, minet, scater, glmSparseNet, tweeDEseq, iBBiG, BicARE, R4RNA, AnnotationHub, beadarray, GSVAdata, rWikiPathways, glmGamPoi, UCell, batchelor, MatrixGenerics, ReactomeGSA, celldex, SingleR, splatter, widgetTools, Rhdf5lib, GWASTools, SpatialExperiment, zinbwave, DelayedMatrixStats, qpgraph, csaw, InteractionSet, HiCDOC, coRdon, KEGGREST
head(pd)
#> name op version type package required
#> 1 R >= 2.10 Depends ABCanalysis 4.5.0
#> 2 plotrix <NA> <NA> Imports ABCanalysis 3.8.4
#> 3 R >= 2.10.0 Depends ACDm 4.5.0
#> 4 Rsolnp <NA> <NA> Imports ACDm 1.16
#> 5 dplyr <NA> <NA> Imports ACDm 1.1.4
#> 6 ggplot2 <NA> <NA> Imports ACDm 3.5.2