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Prepare CNAG data for cellranger

Source: R/cnag.R
llrs_cnag_files.Rd

CNAG returns the data in a format that is not compatible with cellranger. This function merges the data of CNAG to be able to prepare for it.

Usage

llrs_cnag_files(path)

Arguments

path

Path to a file with information about the delivery file.

Value

A data.frame with the output of the names of the files ("d1" and "d2") and its associated information.

Details

The CNAG project is assumed to be below the file in path with all the fastq files.

Examples

# out <- llrs_cnag_cellranger("PROJECT_01.xls")
# out[, c("SAMPLE NAME", "d1", "cr1", "d1", "cr2")]