Package index • rutils

All functions

Bioinformatics: Bioinformatics

llrs_cnag_project_file() llrs_cnag_stats_file() llrs_cnag_id(): File names of the CNAG projects.

llrs_add_member(): Add a contributor to the registry

llrs_box(): Create positions of a box

llrs_cellranger_aggr(): Aggregate several cellranger output

llrs_cellranger_clean(): Clean cellranger multi output

llrs_change_role(): Remove role of a contributor

llrs_check_pkg_version(): Check package version

llrs_cnag_deliver(): Read the delivery file

llrs_cnag_files(): Prepare CNAG data for cellranger

llrs_cnag_samples(): Create a sample sheet from files

llrs_cnag_stats(): Read the CNAG stats

llrs_cnag_symlinks(): Create symlinks

llrs_copy_config(): Copy config to config repository

llrs_diff(): Add column with

llrs_download(): Download a file

llrs_figures(): Creates path for a figure

llrs_hook(): Insert hook

llrs_hooks_list(): List existing hooks

llrs_notify_system(): Use system's notify-send to send a message

llrs_profile(): Provide a R global user profile

llrs_results(): Creates path for results

llrs_send_email(): Send a quick email

llrs_send_ntfy(): Send a message to the NTFY address

llrs_share(): Create a link to a shared file

llrs_shiny_create(): Create shiny app

llrs_shiny_hook(): Creates new shiny app and add hooks.

llrs_tar_load() llrs_tar_read(): Functions helping with targets

llrs_upload(): Upload a file to Microsoft cloud in One Drive

llrs_use_governance(): Add the governance

llrs_rstudio_set() llrs_rstudio_default() llrs_rstudio_restore(): Switch between Rstudio configurations.