Create symlinks — llrs_cnag_symlinks • rutils

Create symlinks for cellranger format (see references).

Usage

llrs_cnag_symlinks(x, name, out_dir)

Arguments

x: A data.frame with the information. At least c("LANE", "MULTIPLEX INDEX", "FLOWCELL", "d1", "d2") columns must be present.
name: The name of the sample, it can be a single character with the name of the column or a vector of characters with the sample name for each file.
out_dir: Path to a folder where the files should be placed. If NULL it doesn't create the symlinks to the folder.

Value

Called by its side effect but also returns a data.frame.

References

https://www.10xgenomics.com/support/software/cell-ranger/latest/analysis/inputs/cr-specifying-fastqs#file-naming-convention